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Citing CMDGA
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Assay category
3
DNA binding
Assay
3
ATAC-seq
3
ChIP-seq
2
single cell RNA-seq
2
total RNA-seq
Project
3
AMP
RFA
3
AMP
Experiment status
3
released
Genome assembly (visualization)
3
GRCh38
3
hg19
Organism
3
Homo sapiens
Target of assay
5
histone
5
histone modification
3
narrow histone mark
broad histone mark
Biosample type
3
primary cell
Organ
3
epithelium
3
pancreas
Life stage
4
adult
3
child
Available data
3
bam
3
bed narrowPeak
3
bigWig
3
fastq
Platform
3
Illumina HiSeq 2000
Run type
3
single-ended
Read length (nt)
3
51
Library made from
3
DNA
Date released
3
September, 2018
Lab
3
AMP-T2D consortium
Replication type
3
unreplicated
Audit category:
3
missing controlled_by
lab.title!
Kyle Gaulton, UCSD
target.investigated_as!
broad histone mark
Showing 3 of 3 results
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Experiment
TSTSR192IUX
released
Audit not_compliant
1
ChIP-seq
of pancreatic ductal cell
Homo sapiens
pancreatic ductal cell male child (5 years)
Target:
H3K4me3
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR319BES
released
Audit not_compliant
1
ChIP-seq
of pancreatic ductal cell
Homo sapiens
pancreatic ductal cell female child (18 months)
Target:
H3K4me3
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR890RGG
released
Audit not_compliant
1
ChIP-seq
of pancreatic ductal cell
Homo sapiens
pancreatic ductal cell female child (18 months)
Target:
H3K27ac
Lab:
AMP-T2D consortium
Project:
AMP