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Citing CMDGA
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Assay category
3
DNA binding
3
Transcription
Assay
3
ChIP-seq
2
total RNA-seq
1
pCHi-C
1
single cell RNA-seq
Project
7
AMP
RFA
7
AMP
Experiment status
7
released
Genome assembly (visualization)
4
GRCh38
4
hg19
Organism
7
Homo sapiens
Target of assay
2
transcription factor
1
RNA binding protein
1
control
Biosample type
7
tissue
Organ
7
liver
Life stage
5
adult
4
child
1
embryonic
1
unknown
Available data
9
bam
7
bigWig
7
fastq
5
bed narrowPeak
bed bed3+
3
bigBed narrowPeak
3
tsv
1
bed broadPeak
1
bigBed broadPeak
1
csv
Platform
3
Illumina Genome Analyzer IIx
Run type
3
single-ended
Read length (nt)
3
36
Library made from
4
DNA
3
RNA
Date released
3
December, 2017
2
July, 2019
1
February, 2021
1
March, 2020
Lab
7
AMP-T2D consortium
Replication type
292
unreplicated
38
isogenic
7
anisogenic
lab.title!
Kyle Gaulton, UCSD
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bed bed3+
Showing 7 of 7 results
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Experiment
DSR534MRK
released
pCHi-C
of liver
Homo sapiens
liver
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR373SNC
released
single cell RNA-seq
of liver
Homo sapiens
liver female adult (41 year) and male adult (21 year) and male adult (26 years) and male adult (44 years) and male adult (65 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR525YKK
released
total RNA-seq
of liver
Homo sapiens
liver female embryo (20 weeks) and male embryo (22 weeks)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR485YUR
released
total RNA-seq
of liver
Homo sapiens
liver female child (6 years) and male adult (32 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR981226
released
ChIP-seq
of liver
Homo sapiens
liver female child (6 years) and male adult (32 years)
Target:
RAD21
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR296175
released
ChIP-seq
of liver
Homo sapiens
liver female child (6 years) and male adult (32 years)
Target:
CTCF
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR485515
released
ChIP-seq
of liver
Homo sapiens
liver female child (6 years) and male adult (32 years)
Target:
rabbit-IgG-control
Lab:
AMP-T2D consortium
Project:
AMP