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Citing CMDGA
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Assay category
3
DNA accessibility
Assay
552
ChIP-seq
169
total RNA-seq
6
DNase-seq
5
WGBS
4
Hi-C
3
ATAC-seq
3
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Project
3
AMP
RFA
3
AMP
Experiment status
3
released
Genome assembly (visualization)
3
GRCh38
3
hg19
Organism
3
Homo sapiens
Biosample type
1
cell line
1
primary cell
1
tissue
Organ
84
pancreas
75
kidney
64
epithelium
47
heart
46
blood vessel
46
vasculature
45
artery
28
eye
25
connective tissue
12
bone element
12
skeleton
8
limb
6
adipose tissue
4
brain
3
liver
1
blood
1
bodily fluid
1
musculature of body
1
nerve
1
pituitary gland
1
skin of body
1
spleen
Life stage
2
adult
1
embryonic
Available data
3
bam
3
bed narrowPeak
1
bed bed3
1
bigBed narrowPeak
1
bigWig
1
fastq
Platform
1
Illumina HiSeq 4000
Run type
1
paired-ended
Read length (nt)
1
100
Library insert size (nt)
1
150-250
Library made from
3
DNA
Date released
May, 2022
1
August, 2017
1
February, 2021
1
October, 2019
Lab
3
AMP-T2D consortium
Replication type
2
unreplicated
1
isogenic
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
lab.title!
Kyle Gaulton, UCSD
month_released!
May, 2022
Showing 3 of 3 results
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Experiment
DSR057RCG
released
Audit error
1
ATAC-seq
of HepG2
Homo sapiens
HepG2
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR093FMP
released
Audit error
1
ATAC-seq
of Liver fetal (hepatocyte)
Homo sapiens
Liver fetal (hepatocyte) female embryo (76 days)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR622315
released
ATAC-seq
of right lobe of liver
Homo sapiens
right lobe of liver female adult (53 years)
Lab:
AMP-T2D consortium
Project:
AMP