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Citing CMDGA
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Assay category
3
DNA binding
1
DNA accessibility
1
DNA sequencing
Assay
3
ChIP-seq
1
FAIRE-seq
1
whole genome sequencing assay
Project
5
AMP
RFA
4
AMP
1
AMP2
Experiment status
5
released
Genome assembly (visualization)
4
hg19
Organism
5
Homo sapiens
Target of assay
3
transcription factor
1
RNA binding protein
Biosample type
4
cell line
1
primary cell
Organ
4
liver
1
blood vessel
1
epithelium
1
vasculature
1
vein
Life stage
3
child
1
newborn
1
unknown
Available data
3392
bam
3129
bigWig
1777
bed narrowPeak
1600
tsv
1358
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
273
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Platform
3
Illumina Genome Analyzer
Run type
3
single-ended
Read length (nt)
3
35
Library made from
5
DNA
Date released
3
November, 2017
1
August, 2021
1
October, 2019
Lab
4
AMP-T2D consortium
1
Bing Ren, UCSD
Replication type
4
isogenic
1
unreplicated
lab.title!
Maike Sander, UCSD
Showing 5 of 5 results
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Experiment
DSR246XUG
released
whole genome sequencing assay
of HepG2
Homo sapiens
HepG2
Lab:
Bing Ren, UCSD
Project:
AMP
Experiment
DSR024UHG
released
FAIRE-seq
of endothelial cell of umbilical vein
Homo sapiens
endothelial cell of umbilical vein newborn
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR829588
released
ChIP-seq
of HepG2
Homo sapiens
HepG2
Target:
CTCF
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR665514
released
ChIP-seq
of HepG2
Homo sapiens
HepG2
Target:
MYC
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR978069
released
ChIP-seq
of HepG2
Homo sapiens
HepG2
Target:
POLR2A
Lab:
AMP-T2D consortium
Project:
AMP