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Citing CMDGA
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Assay category
6
DNA binding
Assay
6
ChIP-seq
Project
6
AMP
RFA
6
AMP
Experiment status
6
released
Genome assembly (visualization)
6
GRCh38
6
hg19
Organism
6
Homo sapiens
Target of assay
4
histone
4
histone modification
2
broad histone mark
2
narrow histone mark
2
transcription factor
Biosample type
6
in vitro differentiated cells
Life stage
4
unknown
2
embryonic
Available data
8
bam
8
fastq
6
bed narrowPeak
6
bigWig
3
bed bed3+
Platform
4
Illumina HiSeq 2500
2
Illumina Genome Analyzer IIx
Run type
6
single-ended
Read length (nt)
3
36
2
40
2
50
Library made from
6
DNA
Date released
4
December, 2017
2
February, 2018
Lab
6
AMP-T2D consortium
Replication type
4
unreplicated
2
isogenic
Audit category:
4
inconsistent control read length
lab.title!
Maike Sander, UCSD
Rohit N. Kulkarni, M.D., Ph.D.
Showing 6 of 6 results
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Experiment
TSTSR275745
released
Audit warning
1
ChIP-seq
of definitive endodermal cell
Homo sapiens
definitive endodermal cell
Target:
H3K4me3
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR440619
released
Audit warning
1
ChIP-seq
of definitive endodermal cell
Homo sapiens
definitive endodermal cell
Target:
H3K27me3
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR782922
released
Audit warning
1
ChIP-seq
of definitive endodermal cell
Homo sapiens
definitive endodermal cell
Target:
H3K4me1
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR568152
released
ChIP-seq
of definitive endodermal cell
Homo sapiens
definitive endodermal cell
Target:
H3K27ac
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR102106
released
Audit warning
1
ChIP-seq
of definitive endodermal cell
Homo sapiens
definitive endodermal cell
Target:
FOXA2
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR043278
released
ChIP-seq
of definitive endodermal cell
Homo sapiens
definitive endodermal cell
Target:
FOXA1
Lab:
AMP-T2D consortium
Project:
AMP