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Schema
Citing CMDGA
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Assay category
7
3D chromatin structure
Assay
1592
ChIP-seq
1286
total RNA-seq
329
ATAC-seq
181
DNase-seq
176
single cell RNA-seq
87
RNA microarray
40
pCHi-C
28
WGBS
28
snATAC-seq
16
small RNA-seq
11
RRBS
10
MeRIP-seq
7
Hi-C
5
GRO-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Project
7
AMP
RFA
6
AMP
1
AMP2
Experiment status
7
released
Genome assembly (visualization)
1
GRCh38
1
hg19
Organism
7
Homo sapiens
Biosample type
5
tissue
primary cell
2
cell line
Organ
4
limb
4
musculature of body
2
pancreas
1
liver
Life stage
6
adult
1
child
Available data
hic
16
bedpe bed3+
1
bed bed3+
1
bedpe
1
bigWig
1
fastq
1
hdf5
Platform
1
Illumina HiSeq 2000
Run type
1
paired-ended
Read length (nt)
1
50
Library made from
7
DNA
Date released
4
July, 2019
1
August, 2021
1
December, 2018
1
October, 2019
Lab
6
AMP-T2D consortium
1
Bing Ren, UCSD
Replication type
4
unreplicated
2
isogenic
1
anisogenic
Audit category:
1
inconsistent assembly
lab.title!
Mark McCarthy, Oxford
biosample_type!
primary cell
files.file_type!
hic
Showing 7 of 7 results
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Experiment
DSR942HZR
released
Hi-C
of islet of Langerhans
Homo sapiens
islet of Langerhans female adult (56 years) and female adult (59 years) and male adult (53 years)
Lab:
Bing Ren, UCSD
Project:
AMP
Experiment
DSR617LKP
released
Audit warning
1
Hi-C
of Panc1
Homo sapiens
Panc1
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR998CGE
released
Hi-C
of gastrocnemius medialis
Homo sapiens
gastrocnemius medialis male adult (54 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR851SPB
released
Hi-C
of gastrocnemius medialis
Homo sapiens
gastrocnemius medialis female adult (51 year)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR920BPY
released
Hi-C
of gastrocnemius medialis
Homo sapiens
gastrocnemius medialis female adult (53 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR163ZFS
released
Hi-C
of gastrocnemius medialis
Homo sapiens
gastrocnemius medialis male adult (37 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR542TGF
released
Hi-C
of HepG2
Homo sapiens
HepG2
Lab:
AMP-T2D consortium
Project:
AMP