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Citing CMDGA
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Assay category
2
DNA accessibility
Assay
1659
ChIP-seq
1247
total RNA-seq
343
ATAC-seq
212
DNase-seq
211
single cell RNA-seq
87
RNA microarray
40
pCHi-C
28
WGBS
26
Hi-C
21
RRBS
18
small RNA-seq
5
FAIRE-seq
GRO-seq
3
snDrop-seq
2
Capture-C
2
snATAC-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
DNAme array
1
MPRA
Project
4
AMP
RFA
4
AMP
Experiment status
4
released
Genome assembly (visualization)
1
hg19
Organism
4
Homo sapiens
Biosample type
2
cell line
2
tissue
Organ
3
pancreas
2
epithelium
1
musculature of body
Life stage
4
unknown
Available data
1
bed bed3+
1
txt
Library made from
4
DNA
Date released
2
August, 2021
1
August, 2022
1
May, 2022
Lab
48
Klaus Kaestner, Upenn
18
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
6
Katalin Susztak, Upenn
4
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Replication type
3
unreplicated
1
anisogenic
Audit category:
2
audit script error
2
inconsistent ontology term
assay_title!
GRO-seq
Showing 4 of 4 results
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Experiment
DSR260JLJ
released
Audit error
1
snATAC-seq
of islet of Langerhans
Homo sapiens
islet of Langerhans
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR127IDO
released
Audit error
1
snATAC-seq
of skeletal muscle tissue
Homo sapiens
skeletal muscle tissue
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR398PHK
released
Audit error
1
Capture-C
of EndoC_BH1
Homo sapiens
EndoC_BH1
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR818RUI
released
Audit error
1
Capture-C
of EndoC_BH1
Homo sapiens
EndoC_BH1
Lab:
AMP-T2D consortium
Project:
AMP