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Citing CMDGA
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Assay category
2
DNA accessibility
Assay
1659
ChIP-seq
1247
total RNA-seq
343
ATAC-seq
212
DNase-seq
211
single cell RNA-seq
87
RNA microarray
40
pCHi-C
28
WGBS
26
Hi-C
21
RRBS
18
small RNA-seq
5
FAIRE-seq
5
GRO-seq
3
snDrop-seq
2
Capture-C
2
snATAC-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
DNAme array
1
MPRA
Project
7
AMP
RFA
7
AMP
Experiment status
7
released
Genome assembly (visualization)
5
hg18
1
hg19
Organism
7
Homo sapiens
Biosample type
4
in vitro differentiated cells
2
tissue
1
stem cell
Organ
1
embryo
1
musculature of body
1
pancreas
Life stage
7
unknown
Available data
5
bigWig
5
fastq
1
bed bed3+
1
txt
Platform
5
Illumina HiSeq 2500
Run type
5
single-ended
Read length (nt)
5
50
Library made from
7
DNA
Date released
5
January, 2018
1
August, 2022
1
May, 2022
Lab
48
Klaus Kaestner, Upenn
18
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
7
AMP-T2D consortium
6
Katalin Susztak, Upenn
Replication type
6
unreplicated
1
anisogenic
Audit category:
2
audit script error
Showing 7 of 7 results
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Experiment
DSR260JLJ
released
Audit error
1
snATAC-seq
of islet of Langerhans
Homo sapiens
islet of Langerhans
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR127IDO
released
Audit error
1
snATAC-seq
of skeletal muscle tissue
Homo sapiens
skeletal muscle tissue
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR520547
released
GRO-seq
of Posterior foregut
Homo sapiens
Posterior foregut
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR171680
released
GRO-seq
of pancreatic endoderm
Homo sapiens
pancreatic endoderm
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR641241
released
GRO-seq
of primitive gut cell
Homo sapiens
primitive gut cell
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR626869
released
GRO-seq
of definitive endodermal cell
Homo sapiens
definitive endodermal cell
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR770475
released
GRO-seq
of hESC
Homo sapiens
hESC (embryoid body cell)
Lab:
AMP-T2D consortium
Project:
AMP