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Citing CMDGA
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Assay category
3
3D chromatin structure
Assay
302
ChIP-seq
285
total RNA-seq
66
ATAC-seq
33
pCHi-C
6
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
4
single cell RNA-seq
3
CRISPR genome editing followed by DNA sequencing
3
Hi-C
2
DNase-seq
2
HiChIP
2
RNA microarray
2
snATAC-seq
1
FAIRE-seq
1
RRBS
1
snDrop-seq
1
whole genome sequencing assay
Project
3
AMP
RFA
2
AMP
1
AMP2
Experiment status
3
released
Genome assembly (visualization)
3
hg19
Organism
3
Homo sapiens
Biosample type
primary cell
2
in vitro differentiated cells
1
cell line
Organ
1
liver
Life stage
17
adult
3
unknown
2
child
2
embryonic
Available data
3
bedpe bed3+
3
hic
Library made from
3
DNA
Date released
2
October, 2019
1
August, 2021
Lab
2
AMP-T2D consortium
1
Bing Ren, UCSD
Replication type
2
isogenic
1
unreplicated
Audit category:
2
inconsistent ontology term
month_released!
April, 2020
biosample_type!
primary cell
Showing 3 of 3 results
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Experiment
DSR744JJN
released
Hi-C
of HepG2
Homo sapiens
HepG2
Lab:
Bing Ren, UCSD
Project:
AMP
Experiment
DSR464RKE
released
Audit error
1
Hi-C
of cardiac precursors (cardiac muscle cell)
Homo sapiens
cardiac precursors (cardiac muscle cell)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR235SPD
released
Audit error
1
Hi-C
of cardiomyocytes (cardiac muscle cell)
Homo sapiens
cardiomyocytes (cardiac muscle cell)
Lab:
AMP-T2D consortium
Project:
AMP