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Citing CMDGA
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Assay category
3
DNA accessibility
Assay
1387
total RNA-seq
1017
ChIP-seq
436
ATAC-seq
363
single cell RNA-seq
188
DNase-seq
87
RNA microarray
77
snATAC-seq
58
WGBS
36
pCHi-C
24
Hi-C
18
small RNA-seq
5
GRO-seq
4
Capture-C
4
MeRIP-seq
3
FAIRE-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
STARR-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Project
4
AMP
RFA
4
AMP
Experiment status
4
released
Genome assembly (visualization)
3
hg19
Organism
3
Homo sapiens
Biosample type
3
tissue
1
cell line
Organ
2
pancreas
1
brain
1
epithelium
1
kidney
Life stage
3
adult
Available data
3
bam
3
bed narrowPeak
3
bigBed narrowPeak
3
bigWig
1
fastq
Platform
1
Illumina Genome Analyzer I
Run type
1
single-ended
Read length (nt)
1
50
Library made from
3
DNA
Date released
2
July, 2019
August, 2017
1
February, 2023
1
November, 2018
Lab
4
AMP-T2D consortium
Replication type
3
anisogenic
isogenic
1
unreplicated
month_released!
August, 2017
replication_type!
isogenic
Showing 4 of 4 results
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Experiment
DSR465BDK
released
CRISPR genome editing followed by sgRNA sequencing
of EndoC_BH1
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR821PLA
released
FAIRE-seq
of kidney
Homo sapiens
kidney female adult (30 years) and male adult (54 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR405QWU
released
FAIRE-seq
of frontal cortex
Homo sapiens
frontal cortex female adult (67 years) and female adult (80 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR803CTG
released
FAIRE-seq
of pancreas
Homo sapiens
pancreas adult (54 years) and adult (60 years)
Lab:
AMP-T2D consortium
Project:
AMP