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Citing CMDGA
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Assay category
6
DNA accessibility
Assay
77
ChIP-seq
23
ATAC-seq
23
single cell RNA-seq
22
total RNA-seq
6
DNase-seq
1
pCHi-C
Project
6
AMP
RFA
6
AMP
Experiment status
6
released
Genome assembly (visualization)
6
GRCh38
6
hg19
Organism
6
Homo sapiens
Biosample type
6
tissue
Organ
2
liver
2
pancreas
1
adipose tissue
1
connective tissue
1
spleen
Life stage
5
adult
1
embryonic
Available data
6
bam
6
bed bed3+
6
bed broadPeak
6
bed narrowPeak
6
bigBed broadPeak
6
bigBed narrowPeak
6
bigWig
6
fastq
Platform
6
Illumina HiSeq 4000
4
Illumina HiSeq 2000
4
Illumina NextSeq 500
2
Illumina HiSeq 2500
1
Illumina Genome Analyzer
1
Illumina Genome Analyzer II
1
Illumina Genome Analyzer IIx
Run type
6
paired-ended
Read length (nt)
6
36
Library made from
6
DNA
Date released
6
November, 2018
Lab
6
AMP-T2D consortium
Replication type
6
unreplicated
month_released!
August, 2020
lab.title!
Struan F.A. Grant, CHOP
Showing 6 of 6 results
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Experiment
TSTSR436ZZC
released
DNase-seq
of spleen
Homo sapiens
spleen male adult (54 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR678CGC
released
DNase-seq
of right lobe of liver
Homo sapiens
right lobe of liver female adult (53 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR521KIV
released
DNase-seq
of omental fat pad
Homo sapiens
omental fat pad female adult (51 year)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR869ANN
released
DNase-seq
of liver
Homo sapiens
liver female embryo (113 days)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR501DXR
released
DNase-seq
of body of pancreas
Homo sapiens
body of pancreas female adult (51 year)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR195PGP
released
DNase-seq
of body of pancreas
Homo sapiens
body of pancreas female adult (53 years)
Lab:
AMP-T2D consortium
Project:
AMP