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Citing CMDGA
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Assay category
3
DNA binding
2
Transcription
Assay
3
ChIP-seq
2
total RNA-seq
1
GRO-seq
Project
6
AMP
RFA
6
AMP
Experiment status
6
released
Genome assembly (visualization)
4
GRCh38
4
hg19
1
hg18
Organism
6
Homo sapiens
Target of assay
2
histone
2
histone modification
1
broad histone mark
1
control
1
narrow histone mark
Biosample type
6
in vitro differentiated cells
Life stage
5
embryonic
1
unknown
Available data
6
fastq
5
bam
5
bigWig
2
bed narrowPeak
2
tsv
Platform
4
Illumina Genome Analyzer IIx
2
Illumina HiSeq 2000
1
Illumina HiSeq 2500
Run type
6
single-ended
Read length (nt)
2
40
2
100
1
36
1
50
1
101
Library insert size (nt)
2
225-275
Library made from
4
DNA
2
RNA
Date released
December, 2017
5
February, 2018
1
January, 2018
Lab
6
AMP-T2D consortium
Replication type
6
unreplicated
Audit category:
2
inconsistent control read length
month_released!
December, 2017
Showing 6 of 6 results
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Experiment
TSTSR308762
released
total RNA-seq
of definitive endodermal cell
Homo sapiens
definitive endodermal cell
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR491958
released
total RNA-seq
of definitive endodermal cell
Homo sapiens
definitive endodermal cell
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR275745
released
Audit warning
1
ChIP-seq
of definitive endodermal cell
Homo sapiens
definitive endodermal cell
Target:
H3K4me3
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR440619
released
Audit warning
1
ChIP-seq
of definitive endodermal cell
Homo sapiens
definitive endodermal cell
Target:
H3K27me3
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR282245
released
ChIP-seq
of definitive endodermal cell
Homo sapiens
definitive endodermal cell
Target:
Control
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR626869
released
GRO-seq
of definitive endodermal cell
Homo sapiens
definitive endodermal cell
Lab:
AMP-T2D consortium
Project:
AMP