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Citing CMDGA
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Assay category
3
DNA accessibility
Assay
1673
ChIP-seq
1347
total RNA-seq
483
ATAC-seq
364
single cell RNA-seq
211
DNase-seq
87
RNA microarray
84
snATAC-seq
63
WGBS
52
pCHi-C
22
Hi-C
10
MeRIP-seq
6
RRBS
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
FAIRE-seq
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
GRO-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Project
5
AMP
RFA
5
AMP
Experiment status
5
released
Genome assembly (visualization)
3
hg19
Organism
5
Homo sapiens
Biosample type
2
cell line
in vitro differentiated cells
2
tissue
1
primary cell
Organ
4
pancreas
3
epithelium
1
blood vessel
1
vasculature
1
vein
Life stage
3
unknown
1
adult
1
newborn
Available data
3
bam
3
bed narrowPeak
3
bigBed narrowPeak
3
bigWig
2
fastq
1
tar
Platform
2
Illumina Genome Analyzer I
Run type
2
single-ended
Read length (nt)
1
35
1
50
Library made from
5
DNA
Date released
2
August, 2021
July, 2019
1
August, 2017
1
November, 2018
1
October, 2019
Lab
5
AMP-T2D consortium
Replication type
3
unreplicated
1
anisogenic
1
isogenic
Audit category:
2
inconsistent ontology term
month_released!
July, 2019
biosample_type!
in vitro differentiated cells
Showing 5 of 5 results
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Experiment
DSR398PHK
released
Audit error
1
Capture-C
of EndoC_BH1
Homo sapiens
EndoC_BH1
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR818RUI
released
Audit error
1
Capture-C
of EndoC_BH1
Homo sapiens
EndoC_BH1
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR024UHG
released
FAIRE-seq
of endothelial cell of umbilical vein
Homo sapiens
endothelial cell of umbilical vein newborn
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR803CTG
released
FAIRE-seq
of pancreas
Homo sapiens
pancreas adult (54 years) and adult (60 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR121227
released
FAIRE-seq
of islet of Langerhans
Homo sapiens
islet of Langerhans male (53 years)
Lab:
AMP-T2D consortium
Project:
AMP