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Assay category
7
DNA accessibility
Assay
248
ChIP-seq
247
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
17
pCHi-C
10
Hi-C
10
RRBS
7
DNase-seq
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Project
7
AMP
RFA
7
AMP
Experiment status
7
released
Genome assembly (visualization)
5
hg19
3
GRCh38
Organism
7
Homo sapiens
Biosample type
15
tissue
7
primary cell
2
cell line
1
in vitro differentiated cells
Organ
4
epithelium
2
blood vessel
2
kidney
2
vasculature
2
vein
1
connective tissue
Life stage
3
unknown
2
adult
2
newborn
Available data
5
bam
5
bed narrowPeak
5
bigBed narrowPeak
5
bigWig
4
bed broadPeak
4
bigBed broadPeak
3
bed bed3+
1
fastq
Platform
1
Illumina Genome Analyzer II
1
Illumina Genome Analyzer IIx
1
Illumina HiSeq 2000
Run type
1
paired-ended
1
single-ended
Read length (nt)
1
36
1
101
Library made from
7
DNA
Date released
June, 2019
4
October, 2019
2
August, 2017
1
November, 2020
Lab
7
AMP-T2D consortium
Replication type
3
isogenic
2
anisogenic
2
unreplicated
month_released!
June, 2019
Showing 7 of 7 results
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Experiment
DSR457QKP
released
DNase-seq
of osteoblast
Homo sapiens
osteoblast
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR181TCZ
released
DNase-seq
of endothelial cell of umbilical vein
Homo sapiens
endothelial cell of umbilical vein newborn
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR542IIT
released
DNase-seq
of endothelial cell of umbilical vein
Homo sapiens
endothelial cell of umbilical vein newborn
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR920RBU
released
DNase-seq
of kidney glomerular epithelial cell
Homo sapiens
kidney glomerular epithelial cell male adult (46 years) and male adult (62 years) and male adult (63 years) and male adult (65 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR290FAD
released
DNase-seq
of kidney tubule cell
Homo sapiens
kidney tubule cell female adult (80 years) and male adult (62 years) and male adult (63 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR251267
released
DNase-seq
of skeletal muscle myoblast
Homo sapiens
skeletal muscle myoblast
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR986440
released
DNase-seq
of skeletal muscle myoblast
Homo sapiens
skeletal muscle myoblast
Lab:
AMP-T2D consortium
Project:
AMP