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Assay category
2
DNA binding
1
DNA accessibility
Assay
2
ChIP-seq
1
ATAC-seq
Project
3
AMP
RFA
3
AMP
Experiment status
2
released
1
archived
Genome assembly (visualization)
1
GRCh38
1
hg19
Organism
3
Homo sapiens
Target of assay
1
control
1
histone
1
histone modification
1
narrow histone mark
Biosample type
3
tissue
Organ
3
pancreas
Life stage
2
unknown
1
adult
Available data
3
bam
3
fastq
1
bed broadPeak
1
bed narrowPeak
1
bigWig
Platform
96
Illumina HiSeq 2000
24
Illumina HiSeq 4000
11
Illumina Genome Analyzer
8
Illumina NextSeq 500
7
Illumina Genome Analyzer II
3
Illumina Genome Analyzer IIx
3
Illumina HiSeq 2500
1
Illumina Genome Analyzer I
Run type
2
single-ended
1
paired-ended
Read length (nt)
3
50
Library made from
3
DNA
Date released
2
August, 2017
1
March, 2019
Lab
2
AMP-T2D consortium
1
Mark McCarthy, Oxford
Replication type
2
unreplicated
1
anisogenic
month_released!
May, 2020
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Experiment
TSTSR955785
archived
ATAC-seq
of islet of Langerhans
Homo sapiens
islet of Langerhans female adult (52 years) and female adult (57 years) and male adult (53 years) and male adult (54 years) and male adult (59 years)
Lab:
Mark McCarthy, Oxford
Project:
AMP
Experiment
TSTSR813852
released
ChIP-seq
of islet of Langerhans
Homo sapiens
islet of Langerhans
Target:
H3K27ac
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR532334
released
ChIP-seq
of islet of Langerhans
Homo sapiens
islet of Langerhans
Target:
Control
Lab:
AMP-T2D consortium
Project:
AMP