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Assay category
3
DNA accessibility
Assay
1277
total RNA-seq
1150
ChIP-seq
234
ATAC-seq
106
single cell RNA-seq
18
small RNA-seq
10
WGBS
3
DNase-seq
1
Hi-C
Project
3
AMP
RFA
3
AMP
Experiment status
3
released
Genome assembly (visualization)
5
hg19
3
GRCh38
Organism
3
Homo sapiens
Biosample type
1
cell line
1
in vitro differentiated cells
1
tissue
Organ
1
connective tissue
1
epithelium
1
kidney
1
pancreas
Life stage
2
unknown
1
child
Available data
198
bam
198
bed narrowPeak
198
bigBed narrowPeak
198
bigWig
196
bed broadPeak
196
bigBed broadPeak
bed bed3+
2
fastq
Platform
1
Illumina Genome Analyzer
1
Illumina HiSeq 2000
Run type
1
paired-ended
1
single-ended
Read length (nt)
1
20
1
36
Library made from
3
DNA
Date released
2
August, 2017
1
October, 2019
Lab
3
AMP-T2D consortium
Replication type
2
isogenic
1
anisogenic
month_released!
November, 2018
files.file_type!
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Experiment
DSR366LGT
released
DNase-seq
of glomerular visceral epithelial cell
Homo sapiens
glomerular visceral epithelial cell
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR999372
released
DNase-seq
of adipocyte
Homo sapiens
adipocyte
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR171380
released
DNase-seq
of islet of Langerhans
Homo sapiens
islet of Langerhans
Lab:
AMP-T2D consortium
Project:
AMP