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Assay category
4
DNA accessibility
Assay
1474
total RNA-seq
1250
ChIP-seq
437
ATAC-seq
362
single cell RNA-seq
87
RNA microarray
76
snATAC-seq
61
WGBS
35
pCHi-C
24
Hi-C
18
small RNA-seq
5
GRO-seq
4
DNase-seq
4
MeRIP-seq
3
FAIRE-seq
3
snDrop-seq
2
Capture-C
2
HiChIP
2
RRBS
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
STARR-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Project
4
AMP
RFA
4
AMP
Experiment status
4
released
Genome assembly (visualization)
1
GRCh38
1
hg19
Organism
4
Homo sapiens
Biosample type
2
primary cell
2
tissue
Organ
2
epithelium
2
kidney
1
liver
1
pancreas
Life stage
3
adult
1
unknown
Available data
178
bam
178
bed narrowPeak
178
bigBed narrowPeak
178
bigWig
bed bed3+
177
bed broadPeak
177
bigBed broadPeak
1
fastq
Platform
1
Illumina Genome Analyzer
Run type
1
single-ended
Read length (nt)
1
20
Library made from
4
DNA
Date released
2
August, 2017
2
October, 2019
Lab
4
AMP-T2D consortium
Replication type
isogenic
3
anisogenic
1
unreplicated
month_released!
November, 2018
files.file_type!
bed bed3+
replication_type!
isogenic
Showing 4 of 4 results
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Experiment
DSR920RBU
released
DNase-seq
of kidney glomerular epithelial cell
Homo sapiens
kidney glomerular epithelial cell male adult (46 years) and male adult (62 years) and male adult (63 years) and male adult (65 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR290FAD
released
DNase-seq
of kidney tubule cell
Homo sapiens
kidney tubule cell female adult (80 years) and male adult (62 years) and male adult (63 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR715510
released
DNase-seq
of right lobe of liver
Homo sapiens
right lobe of liver female adult (53 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR171380
released
DNase-seq
of islet of Langerhans
Homo sapiens
islet of Langerhans
Lab:
AMP-T2D consortium
Project:
AMP