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Citing CMDGA
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Assay category
6
DNA accessibility
Assay
381
total RNA-seq
218
ChIP-seq
149
ATAC-seq
80
single cell RNA-seq
47
WGBS
11
snATAC-seq
10
MeRIP-seq
9
Hi-C
6
DNase-seq
2
Capture-C
2
RRBS
2
small RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
FAIRE-seq
1
pCHi-C
Project
6
AMP
RFA
6
AMP
Experiment status
6
released
Genome assembly (visualization)
6
GRCh38
4
hg19
Organism
6
Homo sapiens
Biosample type
5
tissue
1
cell line
Organ
81
kidney
36
limb
33
musculature of body
30
brain
30
heart
19
epithelium
18
ureter
11
vasculature
9
blood vessel
8
connective tissue
6
pancreas
4
artery
4
eye
3
liver
2
nerve
2
vein
1
adipose tissue
Life stage
5
adult
1
unknown
Available data
6
bam
6
bed narrowPeak
6
bigBed narrowPeak
6
bigWig
5
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
1
fastq
Platform
1
Illumina Genome Analyzer
Run type
1
single-ended
Read length (nt)
1
20
Library made from
6
DNA
Date released
4
June, 2019
November, 2018
1
August, 2017
1
October, 2019
Lab
6
AMP-T2D consortium
Replication type
4
unreplicated
1
anisogenic
1
isogenic
month_released!
November, 2018
September, 2020
Showing 6 of 6 results
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Experiment
DSR718ICF
released
DNase-seq
of Panc1
Homo sapiens
Panc1
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR653JBP
released
DNase-seq
of body of pancreas
Homo sapiens
body of pancreas male adult (37 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR112RFK
released
DNase-seq
of body of pancreas
Homo sapiens
body of pancreas male adult (54 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR367AIT
released
DNase-seq
of pancreas
Homo sapiens
pancreas female adult (30 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR018MFK
released
DNase-seq
of pancreas
Homo sapiens
pancreas male adult (34 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR171380
released
DNase-seq
of islet of Langerhans
Homo sapiens
islet of Langerhans
Lab:
AMP-T2D consortium
Project:
AMP