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Assay
1268
total RNA-seq
893
ChIP-seq
319
ATAC-seq
274
single cell RNA-seq
158
DNase-seq
87
RNA microarray
72
snATAC-seq
67
WGBS
14
Hi-C
7
small RNA-seq
5
GRO-seq
4
pCHi-C
2
Capture-C
2
HiChIP
2
RRBS
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
FAIRE-seq
1
MPRA
1
STARR-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
1
snDrop-seq
1
whole genome sequencing assay
Project
4
AMP
RFA
4
AMP
Experiment status
4
released
Organism
4
Homo sapiens
Biosample type
3
stem cell
1
in vitro differentiated cells
Organ
1
adipose tissue
1
connective tissue
Life stage
4
unknown
Available data
3
tsv
1
bedpe bed3+
1
fastq
Platform
1
Illumina HiSeq 4000
Run type
1
paired-ended
Read length (nt)
1
69
Library made from
4
DNA
Date released
October, 2019
3
March, 2020
1
August, 2018
Lab
4
AMP-T2D consortium
Replication type
28
anisogenic
21
isogenic
4
unreplicated
month_released!
October, 2019
April, 2019
Showing 4 of 4 results
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Experiment
DSR159GRR
released
pCHi-C
of trophoblast
Homo sapiens
trophoblast
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR055YXC
released
pCHi-C
of neural progenitor cell (neural stem cell)
Homo sapiens
neural progenitor cell (neural stem cell)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR543FXV
released
pCHi-C
of mesendoderm
Homo sapiens
mesendoderm
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR423QSN
released
pCHi-C
of white fat cell
Homo sapiens
white adipose cell
Lab:
AMP-T2D consortium
Project:
AMP