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Citing CMDGA
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Assay category
2
DNA accessibility
Assay
1629
ChIP-seq
1453
total RNA-seq
503
ATAC-seq
366
single cell RNA-seq
202
DNase-seq
87
RNA microarray
84
snATAC-seq
63
WGBS
53
pCHi-C
21
Hi-C
10
MeRIP-seq
6
RRBS
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
FAIRE-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Project
7
AMP
RFA
5
AMP2
2
AMP
Experiment status
7
released
Genome assembly (visualization)
2
hg19
Organism
7
Homo sapiens
Biosample type
5
cell line
2
tissue
Organ
2
kidney
2
liver
2
pancreas
Life stage
6
unknown
1
adult
Available data
2
bam
2
bed narrowPeak
2
bigBed narrowPeak
2
bigWig
2
fastq
Platform
2
Illumina Genome Analyzer I
Run type
2
single-ended
Read length (nt)
1
35
1
50
Library made from
5
RNA
2
DNA
Date released
5
August, 2021
July, 2019
1
August, 2017
1
November, 2018
October, 2019
Lab
5
Bing Ren, UCSD
2
AMP-T2D consortium
Replication type
4
isogenic
2
unreplicated
1
anisogenic
Audit category:
1
inconsistent ontology term
month_released!
October, 2019
July, 2019
Showing 7 of 7 results
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Experiment
DSR433YZO
released
Audit error
1
STARR-seq
of Synthesized DNA
Homo sapiens
Synthesized DNA
Lab:
Bing Ren, UCSD
Project:
AMP
Experiment
DSR894OMX
released
STARR-seq
of HEK293T
Homo sapiens
HEK293T
Lab:
Bing Ren, UCSD
Project:
AMP
Experiment
DSR661CGV
released
STARR-seq
of HepG2
Homo sapiens
HepG2
Lab:
Bing Ren, UCSD
Project:
AMP
Experiment
DSR090FJR
released
STARR-seq
of HEK293T
Homo sapiens
HEK293T
Lab:
Bing Ren, UCSD
Project:
AMP
Experiment
DSR594DXF
released
STARR-seq
of HepG2
Homo sapiens
HepG2
Lab:
Bing Ren, UCSD
Project:
AMP
Experiment
TSTSR803CTG
released
FAIRE-seq
of pancreas
Homo sapiens
pancreas adult (54 years) and adult (60 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR121227
released
FAIRE-seq
of islet of Langerhans
Homo sapiens
islet of Langerhans male (53 years)
Lab:
AMP-T2D consortium
Project:
AMP