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Citing CMDGA
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Assay category
5
3D chromatin structure
Assay
575
total RNA-seq
250
ChIP-seq
84
RNA microarray
44
ATAC-seq
27
snATAC-seq
18
single cell RNA-seq
10
DNase-seq
6
WGBS
6
pCHi-C
5
Hi-C
3
snDrop-seq
1
FAIRE-seq
Project
5
AMP
RFA
5
AMP
Experiment status
5
released
Genome assembly (visualization)
5
hg19
1
GRCh38
Organism
5
Homo sapiens
Biosample type
2
in vitro differentiated cells
1
cell line
1
primary cell
1
tissue
Organ
1
blood vessel
1
epithelium
1
heart
1
pancreas
1
vasculature
1
vein
Life stage
3
unknown
1
adult
1
embryonic
Available data
4
hic
3
bedpe bed3+
1
bed bed3+
1
bigWig
1
hdf5
Library made from
5
DNA
Date released
10
March, 2020
8
July, 2019
5
October, 2019
3
August, 2021
3
October, 2022
2
November, 2019
1
December, 2018
1
March, 2019
1
March, 2023
0
February, 2021
Lab
5
AMP-T2D consortium
Replication type
3
isogenic
1
anisogenic
1
unreplicated
Audit category:
2
inconsistent ontology term
1
audit script error
Audit category:
1
inconsistent assembly
Showing 5 of 5 results
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Experiment
DSR786VPZ
released
Hi-C
of heart
Homo sapiens
heart embryo (57 days) and embryo (67 days)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR464RKE
released
Audit error
1
Hi-C
of cardiac precursors (cardiac muscle cell)
Homo sapiens
cardiac precursors (cardiac muscle cell)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR235SPD
released
Audit error
1
Hi-C
of cardiomyocytes (cardiac muscle cell)
Homo sapiens
cardiomyocytes (cardiac muscle cell)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR617LKP
released
Audit warning
1
Hi-C
of Panc1
Homo sapiens
Panc1
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR251SCT
released
Audit error
1
Hi-C
of endothelial cell of umbilical vein
Homo sapiens
endothelial cell of umbilical vein
Lab:
AMP-T2D consortium
Project:
AMP