Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Assay category
4
DNA binding
2
DNA accessibility
Assay
4
ChIP-seq
2
DNase-seq
Project
6
AMP
RFA
6
AMP
Experiment status
6
released
Genome assembly (visualization)
6
GRCh38
6
hg19
Organism
6
Homo sapiens
Target of assay
3
transcription factor
1
RNA binding protein
1
histone
1
histone modification
1
narrow histone mark
Biosample type
6
tissue
Organ
6
liver
Life stage
3
adult
2
child
2
embryonic
1
unknown
Available data
9
fastq
8
bam
6
bed narrowPeak
6
bigWig
5
bigBed narrowPeak
3
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Platform
2
Illumina Genome Analyzer IIx
2
Illumina HiSeq 2500
1
Illumina Genome Analyzer II
1
Illumina HiSeq 2000
1
Illumina HiSeq 4000
Run type
4
single-ended
2
paired-ended
Read length (nt)
36
50
6
33
6
36
3
200
1
32
Mapped read length (nt)
1
36
Library made from
6
DNA
Date released
2
August, 2017
2
December, 2017
2
November, 2018
Lab
6
AMP-T2D consortium
Replication type
4
anisogenic
2
unreplicated
Audit category:
1
inconsistent control read length
organ_slims!
bodily fluid
Showing 6 of 6 results
table-tab-icon
matrix-icon
Download
Experiment
TSTSR004CBL
released
DNase-seq
of liver
Homo sapiens
liver embryo (59 days) and embryo (80 days)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR869ANN
released
DNase-seq
of liver
Homo sapiens
liver female embryo (113 days)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR981226
released
ChIP-seq
of liver
Homo sapiens
liver female child (6 years) and male adult (32 years)
Target:
RAD21
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR296175
released
ChIP-seq
of liver
Homo sapiens
liver female child (6 years) and male adult (32 years)
Target:
CTCF
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR629646
released
ChIP-seq
of liver
Homo sapiens
liver
Target:
FOXA2
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR999552
released
Audit warning
1
ChIP-seq
of liver
Homo sapiens
liver male adult (32 years)
Target:
H3K4me3
Lab:
AMP-T2D consortium
Project:
AMP