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Schema
Citing CMDGA
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Assay category
4
3D chromatin structure
Assay
337
total RNA-seq
218
ChIP-seq
74
single cell RNA-seq
69
ATAC-seq
8
DNase-seq
4
Hi-C
4
WGBS
2
Capture-C
2
FAIRE-seq
2
RRBS
2
small RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
1
snATAC-seq
Project
4
AMP
RFA
4
AMP
Experiment status
4
released
Genome assembly (visualization)
4
hg19
1
GRCh38
Organism
4
Homo sapiens
Biosample type
2
cell line
2
tissue
Organ
6
musculature of body
5
blood vessel
5
epithelium
5
vasculature
4
limb
4
pancreas
3
brain
3
heart
3
liver
2
vein
1
connective tissue
Life stage
3
adult
1
embryonic
Available data
3
bedpe bed3+
3
hic
1
bed bed3+
1
bigWig
1
hdf5
Library made from
4
DNA
Date released
2
November, 2019
1
March, 2020
1
October, 2019
Lab
4
AMP-T2D consortium
3
Klaus Kaestner, Upenn
2
Bing Ren, UCSD
Replication type
2
unreplicated
1
anisogenic
1
isogenic
Audit category:
1
inconsistent ontology term
Audit category:
1
inconsistent assembly
organ_slims!
esophagus
Showing 4 of 4 results
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Experiment
DSR905BNL
released
Hi-C
of pancreas
Homo sapiens
pancreas female adult (30 years) and male adult (34 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR617LKP
released
Audit warning
1
Hi-C
of Panc1
Homo sapiens
Panc1
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR433ZII
released
Audit error
1
Hi-C
of EndoC_BH1
Homo sapiens
EndoC_BH1
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR951IJE
released
Hi-C
of islet of Langerhans
Homo sapiens
islet of Langerhans female adult (43 years)
Lab:
AMP-T2D consortium
Project:
AMP