Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Assay category
3
DNA accessibility
Assay
1832
ChIP-seq
1479
total RNA-seq
524
ATAC-seq
365
single cell RNA-seq
179
DNase-seq
87
RNA microarray
83
snATAC-seq
63
WGBS
56
pCHi-C
24
Hi-C
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
FAIRE-seq
3
snDrop-seq
2
HiChIP
2
RRBS
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Project
6
AMP
RFA
6
AMP
Experiment status
6
released
Genome assembly (visualization)
3
hg19
Organism
6
Homo sapiens
Biosample type
5
tissue
1
primary cell
Organ
3
kidney
2
pancreas
1
blood vessel
1
epithelium
1
vasculature
1
vein
Life stage
4
adult
2
unknown
1
newborn
Available data
3
bam
3
bed narrowPeak
3
bigBed narrowPeak
3
bigWig
3
tsv
2
fastq
1
tar
Platform
2
Illumina Genome Analyzer I
Run type
2
single-ended
Read length (nt)
1
35
1
50
Library made from
3
DNA
3
RNA
Date released
3
February, 2021
July, 2019
1
August, 2017
1
November, 2018
1
October, 2019
Lab
6
AMP-T2D consortium
Replication type
3
anisogenic
2
unreplicated
1
isogenic
organ_slims!
musculature of body
month_released!
July, 2019
Showing 6 of 6 results
table-tab-icon
matrix-icon
Download
Experiment
DSR983MYO
released
snDrop-seq
of kidney (medulla)
Homo sapiens
kidney male adult
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR718NCQ
released
snDrop-seq
of kidney (Cortex-Medulla)
Homo sapiens
kidney male adult
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR684WPX
released
snDrop-seq
of kidney (cortex)
Homo sapiens
kidney NONE and female adult and male adult
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR024UHG
released
FAIRE-seq
of endothelial cell of umbilical vein
Homo sapiens
endothelial cell of umbilical vein newborn
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR803CTG
released
FAIRE-seq
of pancreas
Homo sapiens
pancreas adult (54 years) and adult (60 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR121227
released
FAIRE-seq
of islet of Langerhans
Homo sapiens
islet of Langerhans male (53 years)
Lab:
AMP-T2D consortium
Project:
AMP