Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Assay category
5
DNA binding
Assay
5
ChIP-seq
Project
5
AMP
RFA
5
AMP
Experiment status
5
released
Genome assembly (visualization)
4
GRCh38
4
hg19
Organism
5
Homo sapiens
Target of assay
9
histone
9
histone modification
8
control
8
transcription factor
5
broad histone mark
3
RNA binding protein
3
narrow histone mark
Biosample type
4
tissue
1
cell line
Organ
3
brain
1
liver
1
pancreas
Life stage
3
embryonic
1
child
1
unknown
Available data
5
fastq
4
bam
4
bed narrowPeak
4
bigWig
4
tagAlign
3
bigBed narrowPeak
2
bed broadPeak
1
bed bed3+
1
bigBed broadPeak
Platform
38
Illumina HiSeq 2000
30
Illumina HiSeq 2500
24
Illumina Genome Analyzer IIx
18
Illumina Genome Analyzer
5
Illumina Genome Analyzer II
5
Illumina Genome Analyzer IIe
2
MiSeq
Run type
5
single-ended
Read length (nt)
5
36
Library made from
5
DNA
Date released
3
October, 2017
1
August, 2017
1
November, 2017
Lab
5
AMP-T2D consortium
Replication type
3
unreplicated
1
anisogenic
1
isogenic
Audit category:
3
missing controlled_by
Audit category:
1
inconsistent control read length
organ_slims!
musculature of body
Showing 5 of 5 results
table-tab-icon
matrix-icon
Download
Experiment
TSTSR762932
released
Audit warning
1
ChIP-seq
of HepG2
Homo sapiens
HepG2
Target:
H3K27me3
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR072271
released
Audit not_compliant
1
ChIP-seq
of brain
Homo sapiens
brain male embryo (122 days)
Target:
H3K36me3
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR793865
released
Audit not_compliant
1
ChIP-seq
of brain
Homo sapiens
brain male embryo (122 days)
Target:
H3K9me3
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR625471
released
Audit not_compliant
1
ChIP-seq
of brain
Homo sapiens
brain male embryo (122 days)
Target:
H3K27me3
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR199780
released
ChIP-seq
of islet of Langerhans
Homo sapiens
islet of Langerhans female (37 years) and male (36 years)
Target:
H3K36me3
Lab:
AMP-T2D consortium
Project:
AMP