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Schema
Citing CMDGA
Clear Filters
Assay category
6
DNA binding
Assay
6
ChIP-seq
Project
6
AMP
RFA
6
AMP
Experiment status
6
released
Genome assembly (visualization)
5
GRCh38
5
hg19
Organism
6
Homo sapiens
Target of assay
4
histone
4
histone modification
2
broad histone mark
2
narrow histone mark
1
control
1
transcription factor
Biosample type
4
primary cell
2
in vitro differentiated cells
Organ
4
pancreas
2
connective tissue
Life stage
4
adult
2
unknown
Available data
6
bam
6
fastq
5
bigWig
2
bed narrowPeak
1
bed bed3+
Platform
4
Illumina HiSeq 2000
2
Illumina Genome Analyzer II
Run type
6
single-ended
Read length (nt)
249
36
193
76
133
100
128
50
53
51
51
40
14
27
11
25
10
101
9
35
7
33
7
49
6
200
5
32
4
44
4
61
4
75
3
67
2
37
2
38
2
70
2
74
1
30
1
72
Library made from
6
DNA
Date released
5
August, 2017
1
September, 2018
Lab
6
AMP-T2D consortium
Replication type
5
unreplicated
1
anisogenic
Audit category:
4
missing controlled_by
organ_slims!
skeleton
Showing 6 of 6 results
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Experiment
TSTSR248LEQ
released
Audit not_compliant
1
ChIP-seq
of pancreatic endocrine cell
Homo sapiens
pancreatic endocrine cell female adult (48 years)
Target:
H3K4me1
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR080417
released
ChIP-seq
of adipocyte
Homo sapiens
adipocyte
Target:
PPARG
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR182504
released
ChIP-seq
of adipocyte
Homo sapiens
adipocyte
Target:
Control
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR690557
released
Audit not_compliant
1
ChIP-seq
of pancreatic endocrine cell
Homo sapiens
pancreatic endocrine cell adult
Target:
H3K4me3
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR179007
released
Audit not_compliant
1
ChIP-seq
of pancreatic endocrine cell
Homo sapiens
pancreatic endocrine cell adult
Target:
H3K27me3
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR846115
released
Audit not_compliant
1
ChIP-seq
of pancreatic endocrine cell
Homo sapiens
pancreatic endocrine cell adult
Target:
H3K27ac
Lab:
AMP-T2D consortium
Project:
AMP