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Citing CMDGA
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Assay category
5
DNA binding
Assay
5
ChIP-seq
Project
5
AMP
RFA
5
AMP
Experiment status
5
released
Genome assembly (visualization)
5
GRCh38
5
hg19
Organism
5
Homo sapiens
Target of assay
5
transcription factor
Biosample type
3
in vitro differentiated cells
2
tissue
Organ
105
liver
55
pancreas
48
epithelium
6
embryo
5
blood
5
bodily fluid
5
connective tissue
2
adipose tissue
1
brain
Life stage
5
unknown
Available data
5
bam
5
bed bed3+
5
bigWig
5
fastq
3
bed narrowPeak
Platform
3
HiSeq 1500
2
Illumina HiSeq 2000
Run type
5
single-ended
Read length (nt)
40
76
26
100
5
35
5
50
5
51
4
36
3
67
3
101
2
37
2
38
2
40
2
43
2
49
2
70
1
69
1
75
Library made from
5
DNA
Date released
5
August, 2017
Lab
5
AMP-T2D consortium
Replication type
5
anisogenic
Audit category:
2
missing controlled_by
Audit category:
3
inconsistent control read length
organ_slims!
vasculature
Showing 5 of 5 results
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Experiment
TSTSR957689
released
Audit not_compliant
1
ChIP-seq
of white adipose tissue
Homo sapiens
white adipose tissue
Target:
PPARG
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR725045
released
Audit not_compliant
1
ChIP-seq
of white adipose tissue
Homo sapiens
white adipose tissue
Target:
PPARG
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR155609
released
Audit warning
1
ChIP-seq
of adipocyte
Homo sapiens
adipocyte
Target:
MED1
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR204006
released
Audit warning
1
ChIP-seq
of adipocyte
Homo sapiens
adipocyte
Target:
RELA
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR678966
released
Audit warning
1
ChIP-seq
of adipocyte
Homo sapiens
adipocyte
Target:
MED1
Lab:
AMP-T2D consortium
Project:
AMP