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Citing CMDGA
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Assay category
7
DNA accessibility
Assay
1708
ChIP-seq
1531
total RNA-seq
527
ATAC-seq
363
single cell RNA-seq
87
RNA microarray
83
snATAC-seq
75
WGBS
55
pCHi-C
27
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
7
DNase-seq
5
GRO-seq
5
STARR-seq
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Project
7
AMP
RFA
7
AMP
Experiment status
7
released
Genome assembly (visualization)
4
hg19
2
GRCh38
Organism
7
Homo sapiens
Biosample type
4
primary cell
1
cell line
1
in vitro differentiated cells
1
tissue
Organ
3
epithelium
3
kidney
1
connective tissue
1
liver
Life stage
3
adult
3
unknown
1
child
Available data
206
bam
206
bed narrowPeak
206
bigBed narrowPeak
206
bigWig
204
bed broadPeak
204
bigBed broadPeak
bed bed3+
11
fastq
Platform
2
Illumina HiSeq 2000
Illumina Genome Analyzer
1
Illumina Genome Analyzer II
1
Illumina Genome Analyzer IIx
Run type
2
paired-ended
1
single-ended
Read length (nt)
2
36
1
101
Library made from
7
DNA
Date released
4
August, 2017
3
October, 2019
Lab
7
AMP-T2D consortium
Replication type
4
isogenic
2
anisogenic
1
unreplicated
organ_slims!
vein
files.platform.term_name!
Illumina Genome Analyzer
files.file_type!
bed bed3+
Showing 7 of 7 results
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Experiment
DSR366LGT
released
DNase-seq
of glomerular visceral epithelial cell
Homo sapiens
glomerular visceral epithelial cell
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR920RBU
released
DNase-seq
of kidney glomerular epithelial cell
Homo sapiens
kidney glomerular epithelial cell male adult (46 years) and male adult (62 years) and male adult (63 years) and male adult (65 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR290FAD
released
DNase-seq
of kidney tubule cell
Homo sapiens
kidney tubule cell female adult (80 years) and male adult (62 years) and male adult (63 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR999372
released
DNase-seq
of adipocyte
Homo sapiens
adipocyte
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR715510
released
DNase-seq
of right lobe of liver
Homo sapiens
right lobe of liver female adult (53 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR251267
released
DNase-seq
of skeletal muscle myoblast
Homo sapiens
skeletal muscle myoblast
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR986440
released
DNase-seq
of skeletal muscle myoblast
Homo sapiens
skeletal muscle myoblast
Lab:
AMP-T2D consortium
Project:
AMP