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Citing CMDGA
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Assay category
6
DNA accessibility
Assay
417
total RNA-seq
78
ChIP-seq
34
ATAC-seq
6
DNase-seq
6
WGBS
6
pCHi-C
3
small RNA-seq
1
RNA microarray
1
RRBS
Project
6
AMP
RFA
6
AMP
Experiment status
6
released
Genome assembly (visualization)
6
GRCh38
6
hg19
Organism
6
Homo sapiens
Biosample type
5
tissue
1
primary cell
Organ
81
kidney
36
limb
33
musculature of body
32
brain
30
heart
19
epithelium
18
ureter
11
vasculature
9
blood vessel
9
connective tissue
8
pancreas
6
liver
4
artery
4
eye
2
adipose tissue
2
nerve
2
vein
1
spleen
Life stage
3
embryonic
2
adult
1
unknown
Available data
6
bam
6
bed bed3+
6
bed broadPeak
6
bed narrowPeak
6
bigBed broadPeak
6
bigBed narrowPeak
6
bigWig
1
fastq
Platform
1
Illumina HiSeq 4000
1
Illumina NextSeq 500
Run type
1
paired-ended
Read length (nt)
1
36
Library made from
6
DNA
Date released
5
June, 2019
1
November, 2018
Lab
6
AMP-T2D consortium
Replication type
3
unreplicated
2
anisogenic
1
isogenic
Showing 6 of 6 results
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Experiment
DSR466WVM
released
DNase-seq
of retina
Homo sapiens
retina female embryo (89 days)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR683IDZ
released
DNase-seq
of retina
Homo sapiens
retina embryo (74 days) and embryo (85 days)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR875NPT
released
DNase-seq
of retina
Homo sapiens
retina embryo (125 days) and male embryo (103 days)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR256LQY
released
DNase-seq
of omental fat pad
Homo sapiens
omental fat pad female adult (53 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR282GCO
released
DNase-seq
of retinal pigment epithelial cell
Homo sapiens
retinal pigment epithelial cell
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR521KIV
released
DNase-seq
of omental fat pad
Homo sapiens
omental fat pad female adult (51 year)
Lab:
AMP-T2D consortium
Project:
AMP