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Schema
Citing CMDGA
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Assay category
4
3D chromatin structure
Assay
543
total RNA-seq
281
ChIP-seq
97
single cell RNA-seq
72
ATAC-seq
14
WGBS
8
pCHi-C
4
Hi-C
4
small RNA-seq
2
Capture-C
2
RRBS
1
RNA microarray
Project
4
AMP
RFA
4
AMP
Experiment status
4
released
Genome assembly (visualization)
4
hg19
Organism
4
Homo sapiens
Biosample type
3
tissue
1
primary cell
Organ
9
pancreas
8
epithelium
6
musculature of body
5
blood vessel
5
vasculature
4
limb
4
liver
3
brain
3
heart
2
vein
1
connective tissue
1
kidney
Life stage
2
adult
1
embryonic
1
unknown
Available data
3
bedpe bed3+
3
hic
1
bed bed3+
1
bigWig
1
hdf5
Library made from
4
DNA
Date released
2
March, 2020
1
July, 2019
1
October, 2019
Lab
4
AMP-T2D consortium
Replication type
2
unreplicated
1
anisogenic
1
isogenic
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Experiment
DSR082IVJ
released
Hi-C
of heart right ventricle
Homo sapiens
heart right ventricle male adult (34 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR900RAK
released
Hi-C
of heart left ventricle
Homo sapiens
heart left ventricle male adult (34 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR786VPZ
released
Hi-C
of heart
Homo sapiens
heart embryo (57 days) and embryo (67 days)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR770TGA
released
Hi-C
of brain pericyte
Homo sapiens
brain pericyte
Lab:
AMP-T2D consortium
Project:
AMP