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Schema
Citing CMDGA
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Assay category
3
3D chromatin structure
Assay
397
ChIP-seq
19
total RNA-seq
3
Hi-C
2
ATAC-seq
2
DNase-seq
2
STARR-seq
2
pCHi-C
1
RRBS
1
WGBS
1
whole genome sequencing assay
Project
3
AMP
RFA
2
AMP
1
AMP2
Experiment status
3
released
Genome assembly (visualization)
2
hg19
Organism
3
Homo sapiens
Biosample type
2
cell line
1
primary cell
tissue
Organ
8
epithelium
5
pancreas
4
blood vessel
4
vasculature
3
brain
3
liver
2
vein
1
connective tissue
Life stage
2
unknown
1
child
Available data
1
bed bed3+
1
bedpe bed3+
1
bigWig
1
fastq
1
hdf5
1
hic
Platform
1
Illumina HiSeq 2000
Run type
1
paired-ended
Read length (nt)
1
50
Library made from
3
DNA
Date released
1
August, 2021
1
December, 2018
1
July, 2019
Lab
2
AMP-T2D consortium
1
Bing Ren, UCSD
Replication type
2
isogenic
1
unreplicated
biosample_type!
tissue
Showing 3 of 3 results
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Experiment
DSR744JJN
released
Hi-C
of HepG2
Homo sapiens
HepG2
Lab:
Bing Ren, UCSD
Project:
AMP
Experiment
DSR933OWU
released
Hi-C
of endothelial cell of hepatic sinusoid
Homo sapiens
endothelial cell of hepatic sinusoid
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR542TGF
released
Hi-C
of HepG2
Homo sapiens
HepG2
Lab:
AMP-T2D consortium
Project:
AMP