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Citing CMDGA
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Assay category
6
DNA binding
Assay
6
ChIP-seq
4
snATAC-seq
2
DNase-seq
2
WGBS
2
total RNA-seq
1
FAIRE-seq
1
Hi-C
1
RRBS
1
pCHi-C
Project
6
AMP
RFA
6
AMP
Experiment status
6
released
Genome assembly (visualization)
5
GRCh38
5
hg19
Organism
6
Homo sapiens
Target of assay
4
histone
4
histone modification
3
broad histone mark
1
RNA binding protein
1
control
1
narrow histone mark
1
transcription factor
Biosample type
6
tissue
Organ
6
pancreas
Life stage
6
adult
Available data
6
bam
6
fastq
5
bed narrowPeak
5
bigBed narrowPeak
5
bigWig
Platform
4
Illumina HiSeq 2000
2
Illumina Genome Analyzer
Run type
6
single-ended
Read length (nt)
10
36
4
50
2
51
Mapped read length (nt)
2
51
Library made from
6
DNA
Date released
4
August, 2017
2
October, 2018
Lab
6
AMP-T2D consortium
Replication type
5
unreplicated
1
anisogenic
Audit category:
4
inconsistent control read length
files.read_length!
36
Showing 6 of 6 results
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Experiment
TSTSR141NSK
released
ChIP-seq
of pancreas
Homo sapiens
pancreas adult (54 years) and adult (60 years)
Target:
CTCF
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR824SDJ
released
ChIP-seq
of pancreas
Homo sapiens
pancreas adult (60 years)
Target:
Control
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR444776
released
Audit warning
1
ChIP-seq
of pancreas
Homo sapiens
pancreas female adult (30 years)
Target:
H3K9me3
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR387071
released
Audit warning
1
ChIP-seq
of pancreas
Homo sapiens
pancreas female adult (30 years)
Target:
H3K4me1
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR387352
released
Audit warning
1
ChIP-seq
of pancreas
Homo sapiens
pancreas female adult (30 years)
Target:
H3K36me3
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR580423
released
Audit warning
1
ChIP-seq
of pancreas
Homo sapiens
pancreas female adult (30 years)
Target:
H3K27ac
Lab:
AMP-T2D consortium
Project:
AMP