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Assay category
3
DNA accessibility
Assay
1449
ChIP-seq
1442
total RNA-seq
522
ATAC-seq
363
single cell RNA-seq
87
RNA microarray
83
snATAC-seq
66
WGBS
55
pCHi-C
29
Hi-C
18
small RNA-seq
15
RRBS
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
DNase-seq
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Project
3
AMP
RFA
3
AMP
Experiment status
3
released
Genome assembly (visualization)
1
GRCh38
1
hg19
Organism
3
Homo sapiens
Biosample type
2
primary cell
1
cell line
Organ
3
epithelium
3
kidney
Life stage
2
adult
1
child
Available data
205
bam
205
bed narrowPeak
205
bigBed narrowPeak
205
bigWig
bed bed3+
204
bed broadPeak
204
bigBed broadPeak
9
fastq
Library made from
3
DNA
Date released
August, 2017
3
October, 2019
Lab
3
AMP-T2D consortium
Replication type
2
anisogenic
1
isogenic
target.investigated_as!
RNA binding protein
month_released!
August, 2017
files.file_type!
bed bed3+
Showing 3 of 3 results
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Experiment
DSR366LGT
released
DNase-seq
of glomerular visceral epithelial cell
Homo sapiens
glomerular visceral epithelial cell
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR920RBU
released
DNase-seq
of kidney glomerular epithelial cell
Homo sapiens
kidney glomerular epithelial cell male adult (46 years) and male adult (62 years) and male adult (63 years) and male adult (65 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR290FAD
released
DNase-seq
of kidney tubule cell
Homo sapiens
kidney tubule cell female adult (80 years) and male adult (62 years) and male adult (63 years)
Lab:
AMP-T2D consortium
Project:
AMP