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Assay
1757
ChIP-seq
1471
total RNA-seq
519
ATAC-seq
363
single cell RNA-seq
212
DNase-seq
84
snATAC-seq
75
WGBS
56
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
RNA microarray
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Project
7
AMP
RFA
5
AMP
2
AMP2
Experiment status
7
released
Genome assembly (visualization)
2
hg19
Organism
6
Homo sapiens
Biosample type
3
tissue
2
cell line
2
in vitro differentiated cells
Organ
bone element
3
connective tissue
3
epithelium
2
kidney
2
pancreas
1
adipose tissue
Life stage
6
unknown
Available data
2
bed bed3+
2
tsv
Library made from
4
DNA
2
RNA
Date released
5
August, 2021
2
December, 2019
Lab
5
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Replication type
5
unreplicated
2
anisogenic
Audit category:
2
audit script error
2
inconsistent ontology term
target.investigated_as!
RNA binding protein
organ_slims!
bone element
Showing 7 of 7 results
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Experiment
DSR398PHK
released
Audit error
1
Capture-C
of EndoC_BH1
Homo sapiens
EndoC_BH1
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR818RUI
released
Audit error
1
Capture-C
of EndoC_BH1
Homo sapiens
EndoC_BH1
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR976OUK
released
Capture-C
of osteoblast
Homo sapiens
osteoblast
Lab:
Struan F.A. Grant, CHOP
Project:
AMP
Experiment
DSR621POD
released
Capture-C
of adipocyte
Homo sapiens
adipocyte
Lab:
Struan F.A. Grant, CHOP
Project:
AMP
Experiment
DSR795DZU
released
RNA microarray
of subcutaneous adipose tissue
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR479AEW
released
Audit error
1
RNA microarray
of kidney interstitium
Homo sapiens
kidney interstitium
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR187TER
released
Audit error
1
RNA microarray
of renal glomerulus
Homo sapiens
renal glomerulus
Lab:
AMP-T2D consortium
Project:
AMP