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Schema
Citing CMDGA
Clear Filters
Assay category
6
3D chromatin structure
Assay
1757
ChIP-seq
1489
total RNA-seq
525
ATAC-seq
360
single cell RNA-seq
212
DNase-seq
87
RNA microarray
84
snATAC-seq
63
WGBS
54
pCHi-C
10
MeRIP-seq
6
Hi-C
6
RRBS
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
FAIRE-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Project
5
AMP
1
ITG
RFA
3
AMP
2
AMP2
1
ITG
Experiment status
6
released
Genome assembly (visualization)
4
hg19
2
GRCh38
Organism
6
Homo sapiens
Biosample type
2
cell line
2
primary cell
2
tissue
Organ
2
pancreas
1
blood vessel
1
epithelium
1
kidney
1
liver
1
vasculature
1
vein
Life stage
4
adult
1
child
1
unknown
Available data
23
hic
bedpe bed3+
3
cool
1
bed bed3+
1
bedpe
1
bigWig
1
fastq
1
hdf5
Platform
1
Illumina HiSeq 2000
Run type
1
paired-ended
Read length (nt)
1
50
Library made from
6
DNA
Date released
July, 2019
2
October, 2019
1
August, 2021
1
December, 2018
1
March, 2019
1
March, 2023
Lab
3
AMP-T2D consortium
1
Bing Ren, UCSD
1
ITG
1
Katalin Susztak, Upenn
Replication type
2
anisogenic
2
isogenic
2
unreplicated
Audit category:
1
audit script error
Audit category:
1
inconsistent assembly
target.investigated_as!
RNA binding protein
month_released!
July, 2019
files.file_type!
bedpe bed3+
Showing 6 of 6 results
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Experiment
DSR798SDK
released
Hi-C
of chondrocytes
Homo sapiens
chondrocytes female adult (58 years) and female adult (63 years) and female adult (65 years) and female adult (73 years) and female adult (75 years) and male adult (61 year) and male adult (72 years) and male adult (75 years)
Lab:
ITG
Project:
ITG
Experiment
DSR145PQU
released
Hi-C
of kidney
Homo sapiens
kidney female adult (63 years)
Lab:
Katalin Susztak, Upenn
Project:
AMP
Experiment
DSR617LKP
released
Audit warning
1
Hi-C
of Panc1
Homo sapiens
Panc1
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR251SCT
released
Audit error
1
Hi-C
of endothelial cell of umbilical vein
Homo sapiens
endothelial cell of umbilical vein
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR542TGF
released
Hi-C
of HepG2
Homo sapiens
HepG2
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR043623
released
Hi-C
of islet of Langerhans
Homo sapiens
islet of Langerhans female adult (56 years) and female adult (59 years) and male adult (53 years)
Lab:
Bing Ren, UCSD
Project:
AMP