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Schema
Citing CMDGA
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Assay category
3
DNA binding
Assay
3
ChIP-seq
1
Hi-C
Project
3
AMP
RFA
3
AMP
Experiment status
3
released
Genome assembly (visualization)
3
GRCh38
3
hg19
Organism
2
Homo sapiens
Target of assay
3
histone
3
histone modification
2
broad histone mark
1
narrow histone mark
Biosample type
2
primary cell
1
tissue
Organ
1
pancreas
Life stage
2
unknown
Available data
3
bam
3
bed narrowPeak
3
bigBed narrowPeak
3
bigWig
3
fastq
2
bed broadPeak
2
tagAlign
1
bigBed broadPeak
Platform
2
Illumina HiSeq 2000
1
Illumina Genome Analyzer IIe
Run type
3
single-ended
1
paired-ended
Read length (nt)
3
36
1
76
Library made from
2
DNA
Date released
3
August, 2017
Lab
3
AMP-T2D consortium
Replication type
2
isogenic
1
unreplicated
Audit category:
50
inconsistent control read length
6
inconsistent control run_type
3
inconsistent assembly
target.investigated_as!
RNA binding protein
organ_slims!
mammary gland
Showing 3 of 3 results
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Experiment
TSTSR410352
released
Audit warning
3
ChIP-seq
of skeletal muscle myoblast
Homo sapiens
skeletal muscle myoblast male (22 years)
Target:
H3K4me3
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR016105
released
Audit warning
1
ChIP-seq
of skeletal muscle myoblast
Homo sapiens
skeletal muscle myoblast male (22 years)
Target:
H3K4me1
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR676937
released
Audit warning
1
ChIP-seq
of pancreas
Target:
H3K36me3
Lab:
AMP-T2D consortium
Project:
AMP