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Citing CMDGA
Clear Filters
Assay category
2
DNA binding
2
Transcription
Assay
2
ChIP-seq
2
total RNA-seq
Project
4
AMP
RFA
4
AMP
Experiment status
4
released
Genome assembly (visualization)
3
GRCh38
3
hg19
Organism
4
Homo sapiens
Target of assay
2
histone
2
histone modification
broad histone mark
1
control
1
narrow histone mark
Biosample type
4
in vitro differentiated cells
Life stage
4
embryonic
Available data
4
bam
4
fastq
3
bigWig
2
tsv
1
bed narrowPeak
Platform
3
Illumina Genome Analyzer IIx
2
Illumina HiSeq 2000
Run type
4
single-ended
Read length (nt)
2
100
1
36
1
40
1
101
Library insert size (nt)
2
225-275
Library made from
2
DNA
2
RNA
Date released
4
December, 2017
4
February, 2018
1
January, 2018
Lab
4
AMP-T2D consortium
Replication type
4
unreplicated
Audit category:
1
inconsistent control read length
target.investigated_as!
broad histone mark
Showing 4 of 4 results
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Experiment
TSTSR308762
released
total RNA-seq
of definitive endodermal cell
Homo sapiens
definitive endodermal cell
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR491958
released
total RNA-seq
of definitive endodermal cell
Homo sapiens
definitive endodermal cell
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR275745
released
Audit warning
1
ChIP-seq
of definitive endodermal cell
Homo sapiens
definitive endodermal cell
Target:
H3K4me3
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR282245
released
ChIP-seq
of definitive endodermal cell
Homo sapiens
definitive endodermal cell
Target:
Control
Lab:
AMP-T2D consortium
Project:
AMP