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Assay category
1
DNA sequencing
Assay
404
ChIP-seq
113
total RNA-seq
29
ATAC-seq
6
pCHi-C
5
STARR-seq
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
3
MeRIP-seq
2
Capture-C
2
DNase-seq
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
WGBS
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Project
4
AMP
RFA
3
AMP
1
AMP2
Experiment status
4
released
Organism
4
Homo sapiens
Target of assay
control
3
nucleotide modification
Biosample type
4
cell line
2
tissue
Organ
3
epithelium
3
pancreas
1
liver
Life stage
4
unknown
Available data
1
vcf
Library made from
3
RNA
1
DNA
Date released
3
November, 2020
1
August, 2021
Lab
3
Rohit N. Kulkarni, M.D., Ph.D.
1
Bing Ren, UCSD
Replication type
3
isogenic
1
unreplicated
Audit category:
3
inconsistent ontology term
target.investigated_as!
control
Showing 4 of 4 results
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Experiment
DSR246XUG
released
whole genome sequencing assay
of HepG2
Homo sapiens
HepG2
Lab:
Bing Ren, UCSD
Project:
AMP
Experiment
DSR399KWJ
released
Audit error
1
MeRIP-seq
of EndoC_BH1
Homo sapiens
EndoC_BH1
Target:
N6-Methyladenosine_m6A
Lab:
Rohit N. Kulkarni, M.D., Ph.D.
Project:
AMP
Experiment
DSR814PSX
released
Audit error
1
MeRIP-seq
of EndoC_BH1
Homo sapiens
EndoC_BH1
Target:
N6-Methyladenosine_m6A
Lab:
Rohit N. Kulkarni, M.D., Ph.D.
Project:
AMP
Experiment
DSR781LLU
released
Audit error
1
MeRIP-seq
of EndoC_BH1
Homo sapiens
EndoC_BH1
Target:
N6-Methyladenosine_m6A
Lab:
Rohit N. Kulkarni, M.D., Ph.D.
Project:
AMP