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Citing CMDGA
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Assay category
2
DNA binding
Assay
2
ChIP-seq
1
GRO-seq
Project
3
AMP
RFA
3
AMP
Experiment status
3
released
Genome assembly (visualization)
2
GRCh38
2
hg19
1
hg18
Organism
3
Homo sapiens
Target of assay
2
histone
2
histone modification
1
broad histone mark
control
1
narrow histone mark
Biosample type
3
stem cell
Life stage
3
unknown
Available data
3
bigWig
3
fastq
2
bam
2
bed bed3+
2
bed narrowPeak
Platform
3
Illumina HiSeq 2500
Run type
3
single-ended
Read length (nt)
3
50
1
36
Library made from
3
DNA
Date released
2
December, 2017
1
January, 2018
Lab
3
AMP-T2D consortium
Replication type
2
isogenic
1
unreplicated
Audit category:
2
inconsistent control read length
target.investigated_as!
control
month_released!
May, 2020
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Experiment
TSTSR770475
released
GRO-seq
of hESC
Homo sapiens
hESC (embryoid body cell)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR923383
released
Audit warning
1
ChIP-seq
of hESC
Homo sapiens
hESC (embryoid body cell)
Target:
H3K4me1
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR015572
released
Audit warning
1
ChIP-seq
of hESC
Homo sapiens
hESC (embryoid body cell)
Target:
H3K27ac
Lab:
AMP-T2D consortium
Project:
AMP