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Citing CMDGA
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Assay category
4
DNA binding
Assay
4
ChIP-seq
1
GRO-seq
Project
5
AMP
RFA
5
AMP
Experiment status
5
released
Genome assembly (visualization)
3
GRCh38
3
hg19
1
hg18
Organism
5
Homo sapiens
Target of assay
histone
4
histone modification
2
broad histone mark
2
control
2
narrow histone mark
2
transcription factor
Biosample type
5
in vitro differentiated cells
Life stage
4
unknown
1
embryonic
Available data
7
fastq
6
bam
5
bigWig
2
bed narrowPeak
tsv
1
bed bed3+
Platform
4
Illumina HiSeq 2500
1
Illumina Genome Analyzer IIx
Run type
5
single-ended
Read length (nt)
3
36
2
50
Library made from
5
DNA
Date released
3
December, 2017
1
February, 2018
1
January, 2018
Lab
5
AMP-T2D consortium
Replication type
4
unreplicated
1
isogenic
Audit category:
1
inconsistent control read length
target.investigated_as!
histone
files.file_type!
tsv
Showing 5 of 5 results
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Experiment
TSTSR993192
released
ChIP-seq
of primitive gut cell
Homo sapiens
primitive gut cell
Target:
Control
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR641241
released
GRO-seq
of primitive gut cell
Homo sapiens
primitive gut cell
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR345029
released
Audit warning
1
ChIP-seq
of primitive gut cell
Homo sapiens
primitive gut cell
Target:
FOXA2
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR627964
released
ChIP-seq
of primitive gut cell
Homo sapiens
primitive gut cell
Target:
FOXA1
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR648832
released
ChIP-seq
of primitive gut cell
Homo sapiens
primitive gut cell
Target:
Control
Lab:
AMP-T2D consortium
Project:
AMP