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Assay
1849
ChIP-seq
1519
total RNA-seq
531
ATAC-seq
363
single cell RNA-seq
212
DNase-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
57
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
5
FAIRE-seq
5
MeRIP-seq
5
STARR-seq
4
Capture-C
4
GRO-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Project
4
AMP
3
T1D
RFA
4
AMP
3
T1D
Experiment status
7
released
Genome assembly (visualization)
4
hg18
Organism
7
Homo sapiens
Biosample type
3
cell line
3
in vitro differentiated cells
1
stem cell
Organ
embryo
Life stage
7
unknown
Available data
4
bigWig
4
fastq
Platform
4
Illumina HiSeq 2500
Run type
4
single-ended
Read length (nt)
4
50
Library made from
7
DNA
Date released
4
January, 2018
3
February, 2023
Lab
4
AMP-T2D consortium
3
Kyle Gaulton, UCSD
Replication type
4
unreplicated
3
isogenic
target.investigated_as!
nucleotide modification
organ_slims!
embryo
Showing 7 of 7 results
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Experiment
DSR991KIL
released
CRISPR genome editing followed by DNA sequencing
of EndoC_BH1
Homo sapiens
EndoC_BH1
Lab:
Kyle Gaulton, UCSD
Project:
T1D
Experiment
DSR618IYM
released
CRISPR genome editing followed by DNA sequencing
of EndoC_BH1
Homo sapiens
EndoC_BH1
Lab:
Kyle Gaulton, UCSD
Project:
T1D
Experiment
DSR351ZKB
released
CRISPR genome editing followed by DNA sequencing
of EndoC_BH1
Homo sapiens
EndoC_BH1
Lab:
Kyle Gaulton, UCSD
Project:
T1D
Experiment
TSTSR520547
released
GRO-seq
of Posterior foregut
Homo sapiens
Posterior foregut
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR641241
released
GRO-seq
of primitive gut cell
Homo sapiens
primitive gut cell
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR626869
released
GRO-seq
of definitive endodermal cell
Homo sapiens
definitive endodermal cell
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR770475
released
GRO-seq
of hESC
Homo sapiens
hESC (embryoid body cell)
Lab:
AMP-T2D consortium
Project:
AMP