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Assay category
3
DNA accessibility
Assay
1522
ChIP-seq
1286
total RNA-seq
331
ATAC-seq
176
single cell RNA-seq
172
DNase-seq
87
RNA microarray
40
pCHi-C
28
snATAC-seq
24
Hi-C
21
WGBS
16
small RNA-seq
11
RRBS
5
GRO-seq
5
MeRIP-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
FAIRE-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Project
3
AMP
RFA
3
AMP
Experiment status
3
released
Genome assembly (visualization)
3
hg19
Organism
3
Homo sapiens
Biosample type
3
tissue
primary cell
Organ
1
brain
1
kidney
1
pancreas
Life stage
2
adult
1
unknown
Available data
3
bam
3
bed narrowPeak
3
bigBed narrowPeak
3
bigWig
1
fastq
Platform
1
Illumina Genome Analyzer I
Run type
1
single-ended
Read length (nt)
1
35
Library made from
3
DNA
Date released
2
July, 2019
1
August, 2017
November, 2018
Lab
3
AMP-T2D consortium
Replication type
2
anisogenic
1
unreplicated
target.investigated_as!
nucleotide modification
month_released!
November, 2018
biosample_type!
primary cell
Showing 3 of 3 results
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Experiment
DSR821PLA
released
FAIRE-seq
of kidney
Homo sapiens
kidney female adult (30 years) and male adult (54 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR405QWU
released
FAIRE-seq
of frontal cortex
Homo sapiens
frontal cortex female adult (67 years) and female adult (80 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR121227
released
FAIRE-seq
of islet of Langerhans
Homo sapiens
islet of Langerhans male (53 years)
Lab:
AMP-T2D consortium
Project:
AMP