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Citing CMDGA
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Assay category
6
DNA binding
Assay
6
ChIP-seq
Project
6
AMP
RFA
6
AMP
Experiment status
6
released
Genome assembly (visualization)
5
GRCh38
5
hg19
Organism
6
Homo sapiens
Target of assay
4
histone
4
histone modification
2
broad histone mark
2
control
2
narrow histone mark
2
transcription factor
Biosample type
6
in vitro differentiated cells
Life stage
3
embryonic
3
unknown
Available data
6
bam
6
fastq
4
bed narrowPeak
4
bigWig
3
bed bed3+
Platform
3
Illumina Genome Analyzer IIx
3
Illumina HiSeq 2500
Run type
6
single-ended
Read length (nt)
4
36
2
40
1
50
Library made from
6
DNA
Date released
3
December, 2017
3
February, 2018
Lab
6
AMP-T2D consortium
Replication type
3
isogenic
3
unreplicated
Audit category:
3
inconsistent control read length
organ_slims!
liver
Showing 6 of 6 results
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Experiment
TSTSR275745
released
Audit warning
1
ChIP-seq
of definitive endodermal cell
Homo sapiens
definitive endodermal cell
Target:
H3K4me3
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR440619
released
Audit warning
1
ChIP-seq
of definitive endodermal cell
Homo sapiens
definitive endodermal cell
Target:
H3K27me3
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR282245
released
ChIP-seq
of definitive endodermal cell
Homo sapiens
definitive endodermal cell
Target:
Control
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR782922
released
Audit warning
1
ChIP-seq
of definitive endodermal cell
Homo sapiens
definitive endodermal cell
Target:
H3K4me1
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR568152
released
ChIP-seq
of definitive endodermal cell
Homo sapiens
definitive endodermal cell
Target:
H3K27ac
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR543637
released
ChIP-seq
of definitive endodermal cell
Homo sapiens
definitive endodermal cell
Target:
Control
Lab:
AMP-T2D consortium
Project:
AMP