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Schema
Clear Filters
Assay category
1536
Transcription
1510
DNA binding
679
DNA accessibility
82
DNA methylation
26
3D chromatin structure
1
DNA sequencing
Assay
1510
ChIP-seq
1240
total RNA-seq
419
ATAC-seq
281
single cell RNA-seq
182
DNase-seq
73
snATAC-seq
69
RNA microarray
64
WGBS
49
pCHi-C
26
Hi-C
17
RRBS
12
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
STARR-seq
4
GRO-seq
2
CRISPR genome editing followed by DNA sequencing
2
HiChIP
2
snDrop-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
Capture-C
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
whole genome sequencing assay
Project
3467
AMP
264
HPAP
196
T1D
33
KPMP
15
LungMap
3
community
1
ITG
RFA
3320
AMP
264
HPAP
196
T1D
147
AMP2
33
KPMP
15
LungMap2
3
community
1
ITG
Experiment status
3978
released
1
archived
Genome assembly (visualization)
2594
hg19
2530
GRCh38
4
hg18
Organism
3967
Homo sapiens
Target of assay
815
histone modification
814
histone
420
transcription factor
409
narrow histone mark
405
broad histone mark
278
control
88
RNA binding protein
66
recombinant protein
31
chromatin remodeller
5
nucleotide modification
4
other context
4
other post-translational modification
Biosample type
2275
tissue
865
primary cell
534
cell line
296
in vitro differentiated cells
9
stem cell
Organ
770
pancreas
640
liver
555
connective tissue
399
adipose tissue
381
epithelium
316
heart
284
kidney
235
brain
186
vasculature
182
blood vessel
132
bone element
110
artery
102
limb
81
musculature of body
58
blood
58
bodily fluid
52
eye
37
nerve
30
embryo
23
spleen
19
vein
16
lung
14
skeleton
14
ureter
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Life stage
2380
adult
748
unknown
433
child
378
embryonic
40
newborn
Available data
2742
bam
2569
bigWig
1471
bed narrowPeak
1293
tsv
1093
fastq
856
bigBed narrowPeak
321
tagAlign
268
bed broadPeak
237
bigBed broadPeak
227
bed bed3+
130
txt
93
zippedFastqFolder
53
xls
32
bed bedMethyl
32
bigBed bedMethyl
17
bedpe bed3+
17
hic
11
bed bed3
7
csv
6
bed bedgraph
5
hdf5
4
tar
2
ibed
1
bedpe
1
cool
1
tagAlign bed3+
1
vcf
Platform
460
Illumina HiSeq 2000
157
Illumina HiSeq 2500
136
Illumina NovaSeq 6000
125
Illumina HiSeq 4000
104
Illumina Genome Analyzer IIx
85
Illumina Genome Analyzer
47
Illumina NextSeq 500
33
HiSeq HighOutput V4
20
Illumina Genome Analyzer II
14
Illumina Genome Analyzer IIe
6
HiSeq 1500
6
MiSeq
5
Illumina HiSeq X Ten
3
Illumina Genome Analyzer I
2
Applied Biosystems SOLiD System 3 Plus
Run type
734
single-ended
456
paired-ended
52
unknown
Read length (nt)
203
36
186
100
179
50
174
101
164
76
78
51
52
8
48
75
40
40
22
90
20
49
19
98
18
16
18
28
17
43
13
27
12
102
11
25
11
26
9
91
7
35
7
41
6
24
6
33
6
200
5
32
5
151
4
44
3
61
3
94
2
38
2
67
2
97
1
20
1
30
1
37
1
69
1
70
1
72
1
74
1
99
1
105
1
110
1
125
1
140
1
147
1
150
Mapped read length (nt)
4
50
3
36
2
51
Library insert size (nt)
101
>200
27
>100
10
225-275
1
150-250
Library made from
2404
DNA
1563
RNA
Date released
577
February, 2021
337
August, 2017
328
November, 2017
323
May, 2021
263
May, 2020
261
October, 2019
254
August, 2021
186
June, 2019
164
May, 2022
161
February, 2023
127
July, 2018
96
May, 2019
92
July, 2019
77
November, 2018
76
December, 2017
67
April, 2019
63
October, 2018
57
September, 2018
54
March, 2020
52
September, 2020
43
April, 2018
42
November, 2019
33
September, 2023
32
May, 2024
30
December, 2018
26
February, 2018
24
January, 2019
21
February, 2020
20
October, 2017
15
April, 2020
15
November, 2020
12
January, 2021
8
December, 2019
8
May, 2023
8
September, 2017
6
January, 2018
5
March, 2019
4
August, 2020
4
March, 2023
3
August, 2018
2
June, 2018
2
October, 2022
1
August, 2022
Lab
3168
AMP-T2D consortium
272
Kyle Gaulton, UCSD
264
Klaus Kaestner, Upenn
111
Katalin Susztak, Upenn
33
KPMP
32
Patrick T. Ellinor, Broad
31
Karen Mohlke, UNC
30
Bing Ren, UCSD
15
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
5
Struan F.A. Grant, CHOP
3
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Replication type
2803
unreplicated
661
isogenic
515
anisogenic
Audit category:
276
inconsistent ontology term
34
audit script error
23
inconsistent control
1
inconsistent replicate
Audit category:
73
missing controlled_by
Audit category:
49
inconsistent control read length
9
inconsistent control run_type
4
inconsistent assembly
type!
AntibodyLot
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Experiment
Showing 6 of 3979 results
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Experiment
DSR934CIK
released
single cell RNA-seq
of kidney
Homo sapiens
kidney male adult (39 years)
Lab:
KPMP
Project:
KPMP
Experiment
DSR345JBQ
released
single cell RNA-seq
of kidney
Homo sapiens
kidney male adult (66 years)
Lab:
KPMP
Project:
KPMP
Experiment
DSR694WFN
released
single cell RNA-seq
of kidney
Homo sapiens
kidney female adult (42 years)
Lab:
KPMP
Project:
KPMP
Experiment
DSR817LLE
released
single cell RNA-seq
of kidney
Homo sapiens
kidney female adult (53 years)
Lab:
KPMP
Project:
KPMP
Experiment
DSR780ZEV
released
single cell RNA-seq
of kidney
Homo sapiens
kidney female adult (33 years)
Lab:
KPMP
Project:
KPMP
Experiment
DSR108WVG
released
single cell RNA-seq
of kidney
Homo sapiens
kidney male adult (71 year)
Lab:
KPMP
Project:
KPMP