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4
RNA-seq
1
ATAC-seq
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single cell isolation followed by RNA-seq
1
whole genome sequencing assay
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7
active
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1
A short overview of the main analysis steps for eQTL Catalogue
1
Activity by Contact
Annotation pipeline popularVote (popV for short) from Tabula Sapiens
1
Pipeline holder for unknown or undefined pipeline
1
Pseudo-bulk gene expression and differential activity (Elgamal et al.)
1
RNA-seq Pipeline (Paired-ended, ENCODE)
1
RNA-seq Pipeline (Single-ended, ENCODE)
1
RNA-seq Pipeline PLoS Genet. 2021-05-13;17(5):e100953
scRNA-seq clustering for HPAP dataset
Developed by
5
AMP-T2D consortium
2
Kyle Gaulton, UCSD
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Picard
Samtools
title!
Annotation pipeline popularVote (popV for short) from Tabula Sapiens
scRNA-seq clustering for HPAP dataset
Showing 7 of 7 results
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Pipeline
DPL066WNI
active
Pseudo-bulk gene expression and differential activity (Elgamal et al.)
Assays:
single cell isolation followed by RNA-seq
Pipeline
DPL126DIZ
active
Pipeline holder for unknown or undefined pipeline
Pipeline
DPL005RCG
active
A short overview of the main analysis steps for eQTL Catalogue
Assays:
RNA-seq, whole genome sequencing assay
Software:
Pipeline
DPL172PKH
active
RNA-seq Pipeline PLoS Genet. 2021-05-13;17(5):e100953
Assays:
RNA-seq
Software:
Pipeline
DPL610SXT
active
RNA-seq Pipeline (Paired-ended, ENCODE)
Assays:
RNA-seq
Software:
Pipeline
DPL610SXTsingleended
active
RNA-seq Pipeline (Single-ended, ENCODE)
Assays:
RNA-seq
Software:
Pipeline
DPL010CNP
active
Activity by Contact
Assays:
ATAC-seq, ChIP-seq, DNase-seq
Software: