Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Clear Filters
Assay
1
ChIP-seq
1
DNase-seq
Pipeline status
1
active
Pipeline groups
1
ChIP-Atlas Pipeline
Software
9
BEDTools
9
MACS2
7
Bowtie 2
7
Samtools
6
Picard
5
bedToBigBed
5
cutadapt
5
sambamba
4
ptools_bin
3
overlap_peaks.py
2
Irreproducible Discovery Rate (IDR)
2
Phantompeakqualtools
2
bedGraphToBigWig
1
BWA
1
ChromHMM
1
CoLo
1
SRA_Toolkit
1
deepTools
1
fastp
1
getVariantOverlap.py
1
makeCandidateRegions.py
1
predict.py
1
run.neighborhoods.py
1
unknown
Developed by
1
AMP-T2D consortium
Showing 1 of 1 results
table-tab-icon
matrix-icon
Pipeline
DPL983WYV
active
ChIP-Atlas Pipeline
Assays:
ChIP-seq, DNase-seq
Software:
SRA_Toolkit, Bowtie 2, Samtools, BEDTools, bedGraphToBigWig, MACS2, unknown, CoLo