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Assay
4
ATAC-seq
2
ChIP-seq
2
RNA-seq
1
single cell isolation followed by RNA-seq
Pipeline status
6
active
Pipeline groups
1
ATAC-seq Pipeline Cebola Lab
1
ATAC-seq Pipeline Cebola Lab (Hepatocytes)
1
ATAC-seq Pipeline Gaulton Lab
1
ATAC-seq Pipeline PLoS Genet. 2021-05-13;17(5):e100953
1
RNA-seq Pipeline Cebola Lab
1
RNA-seq Pipeline PLoS Genet. 2021-05-13;17(5):e100953
Software
5
Samtools
4
MACS2
3
BEDTools
3
Picard
3
deepTools
3
fastp
2
BWA
2
Bowtie 2
2
STAR
2
bedGraphToBigWig
1
RSEM
1
SALMON
1
Trim Galore
Developed by
AMP-T2D consortium
3
Ines Cebola, Imperial College London
3
Kyle Gaulton, UCSD
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AMP-T2D consortium
Showing 6 of 6 results
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Pipeline
DPL961ZQY
active
ATAC-seq Pipeline PLoS Genet. 2021-05-13;17(5):e100953
Assays:
ATAC-seq
Software:
Trim Galore, BWA, Samtools, Picard, MACS2
Pipeline
DPL172PKH
active
RNA-seq Pipeline PLoS Genet. 2021-05-13;17(5):e100953
Assays:
RNA-seq
Software:
STAR, RSEM
Pipeline
DPL121OYY
active
ATAC-seq Pipeline Gaulton Lab
Assays:
ATAC-seq
Software:
BWA, Samtools, Picard, MACS2, BEDTools
Pipeline
DPL779IGH
active
ATAC-seq Pipeline Cebola Lab (Hepatocytes)
Assays:
ATAC-seq
Software:
fastp, Bowtie 2, Samtools, BEDTools, deepTools, MACS2, bedGraphToBigWig
Pipeline
DPL741HGX
active
ATAC-seq Pipeline Cebola Lab
Assays:
ATAC-seq
Software:
fastp, Bowtie 2, Samtools, Picard, BEDTools, deepTools, MACS2, bedGraphToBigWig
Pipeline
DPL450NWL
active
RNA-seq Pipeline Cebola Lab
Assays:
RNA-seq
Software:
fastp, STAR, SALMON, Samtools, deepTools