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Assay
1
ChIP-seq
1
RNA-seq
1
single cell isolation followed by RNA-seq
Pipeline status
4
active
Pipeline groups
1
ChIP-seq Pipeline Ellinor Lab
1
Pseudo-bulk gene expression and differential activity (Elgamal et al.)
1
RNA-seq Pipeline PLoS Genet. 2021-05-13;17(5):e100953
1
scRNA-seq clustering for HPAP dataset
Software
6
MACS2
Samtools
5
BEDTools
4
Picard
4
deepTools
4
fastp
3
BWA
3
Bowtie 2
3
bedGraphToBigWig
2
STAR
1
ChromHMM
1
RSEM
1
SALMON
1
Trim Galore
Developed by
AMP-T2D consortium
3
Kyle Gaulton, UCSD
1
Patrick T. Ellinor, Broad
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AMP-T2D consortium
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Samtools
Showing 4 of 4 results
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Pipeline
DPL255HPT
active
scRNA-seq clustering for HPAP dataset
Pipeline
DPL066WNI
active
Pseudo-bulk gene expression and differential activity (Elgamal et al.)
Assays:
single cell isolation followed by RNA-seq
Pipeline
DPL172PKH
active
RNA-seq Pipeline PLoS Genet. 2021-05-13;17(5):e100953
Assays:
RNA-seq
Software:
STAR, RSEM
Pipeline
DPL118KGX
active
ChIP-seq Pipeline Ellinor Lab
Assays:
ChIP-seq
Software:
BWA, Picard, MACS2, BEDTools, ChromHMM