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Assay
2
ATAC-seq
ChIP-seq
1
RNA-seq
Pipeline status
3
active
Pipeline groups
1
ATAC-seq Pipeline Cebola Lab
1
ATAC-seq Pipeline Cebola Lab (Hepatocytes)
1
RNA-seq Pipeline Cebola Lab
Software
3
Samtools
3
deepTools
3
fastp
2
BEDTools
2
Bowtie 2
2
MACS2
2
bedGraphToBigWig
1
Picard
1
SALMON
1
STAR
Developed by
10
AMP-T2D consortium
5
Kyle Gaulton, UCSD
3
Ines Cebola, Imperial College London
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ChIP-seq
Showing 3 of 3 results
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Pipeline
DPL779IGH
active
ATAC-seq Pipeline Cebola Lab (Hepatocytes)
Assays:
ATAC-seq
Software:
fastp, Bowtie 2, Samtools, BEDTools, deepTools, MACS2, bedGraphToBigWig
Pipeline
DPL741HGX
active
ATAC-seq Pipeline Cebola Lab
Assays:
ATAC-seq
Software:
fastp, Bowtie 2, Samtools, Picard, BEDTools, deepTools, MACS2, bedGraphToBigWig
Pipeline
DPL450NWL
active
RNA-seq Pipeline Cebola Lab
Assays:
RNA-seq
Software:
fastp, STAR, SALMON, Samtools, deepTools