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Citing CMDGA
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Assay
ATAC-seq
2
ChIP-seq
2
RNA-seq
1
single cell isolation followed by RNA-seq
Pipeline status
6
active
Pipeline groups
1
ChIP-seq Pipeline Cebola Lab
1
ChIP-seq Pipeline Ellinor Lab
1
Pseudo-bulk gene expression and differential activity (Elgamal et al.)
1
RNA-seq Pipeline Cebola Lab
1
RNA-seq Pipeline PLoS Genet. 2021-05-13;17(5):e100953
1
scRNA-seq clustering for HPAP dataset
Developed by
AMP-T2D consortium
3
Kyle Gaulton, UCSD
2
Ines Cebola, Imperial College London
1
Patrick T. Ellinor, Broad
title!
TF ChIP-seq Pipeline 2 (ENCODE unreplicated)
assay_term_names!
ATAC-seq
lab.title!
AMP-T2D consortium
Showing 6 of 6 results
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Pipeline
DPL255HPT
active
scRNA-seq clustering for HPAP dataset
Pipeline
DPL066WNI
active
Pseudo-bulk gene expression and differential activity (Elgamal et al.)
Assays:
single cell isolation followed by RNA-seq
Pipeline
DPL172PKH
active
RNA-seq Pipeline PLoS Genet. 2021-05-13;17(5):e100953
Assays:
RNA-seq
Software:
Pipeline
DPL450NWL
active
RNA-seq Pipeline Cebola Lab
Assays:
RNA-seq
Software:
Pipeline
DPL118KGX
active
ChIP-seq Pipeline Ellinor Lab
Assays:
ChIP-seq
Software:
Pipeline
DPL245EPK
active
ChIP-seq Pipeline Cebola Lab
Assays:
ChIP-seq
Software: